Hochbaum Group

Combinatorial Optimization and Data Mining
Find our software on GitHub

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Prof. Hochbaum and Sheng Liu’s paper on Adjacency-Clustering and its Application for Yield Prediction in Integrated Circuit Manufacturing has been accepted for publication in Operations Research.

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Rebecca Sarto Basso and Prof. Hochbaum’s paper on Efficient Algorithms to Discover Alterations with Complementary Functional Association in Cancer has been accepted for the RECOMB 2018 conference.

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The HNCcorr algorithm developed for cell identification in calcium-imaging datasets is a top performer for the Neurofinder benchmark. The Neuro finder community benchmark is an initiative of the CodeNeuro collective of neuroscientists that encourages software tool development for neuroscience research. The Neurofi nder benchmark consists of 28 calcium imaging movies, 19 for training algorithms and the remaining nine for unbiased evaluation of algorithmic performance. The datasets have been contributed by various labs and have been recorded under different experimental conditions.

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Congratulations on passing the qualifying exam to:

  • Rebecca Sarto Basso - December 2017
  • Dean Grosbard - December 2017
  • Xu Rao - May 2017
  • Quico Spaen - May 2017
  • Mark Velednitsky - May 2017

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Cheng Lyu and Prof. Hochbaum’s paper on Faster Algorithm for Solving Isotonic Median Regression and Fused Lasso problems has been published in SIAM Journal on Optimization.

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People

Principal Investigator

Dorit S. Hochbaum Dorit S. Hochbaum

PhD Students

Titouan Jehl Titouan Jehl

Xu Rao Xu Rao

Rebecca Sarto Basso Rebecca Sarto Basso

Quico Spaen Quico Spaen

Mark Velednitsky Mark Velednitsky

Undergraduate Students

Minjun Chang Minjun Chang

Kaitlyn Li Kaitlyn Li


Former PhD Students & Post-docs

Current Projects

Cell identification in Calcium Imaging

Dorit S. Hochbaum & Quico Spaen

Discovery of Driver Mutations in Cancer

Dorit S. Hochbaum & Rebecca Sarto Basso

Contact

  • hochbaum [at] ieor.berkeley.edu
  • (510) 642-4998
  • Etcheverry Hall, University of California, Berkeley, CA, USA
  • Email for appointment